Giacomello Lab

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Team members

Stefania Giacomello, PhD, team leader, KTH
Sami Saarenpää, PhD student, KTH
Nathan Zivi, co-PhD student, SLU
Zaneta Andrusivova, co-PhD student, KTH
Hailey Sounart, PhD student, KTH
Yuvarani Masarapu, research engineer, KTH
Jian Wu, postdoctoral researcher, KTH / Novo Nordisk
Solène Frapard, research engineer, KTH
Aida Verdes, EMBO fellow (short term)

Key publications

Spatially resolved host-bacteria-fungi interactomes via spatial metatranscriptomics
Sami Saarenpää, Or Shalev, Haim Ashkenazy, Vanessa de Oliveira-Carlos, Derek Severi Lundberg, Detlef Weigel, Stefania Giacomello
bioRxiv (July 2022)

A new era for plant science: spatial single-cell transcriptomics
Giacomello S
Current Opinion in Plant Biology (26 Apr 2021)

A spatiotemporal organ-wide gene expression and cell atlas of the developing human heart
Asp M*†, Giacomello S†, Larsson L, Wu C, Fürth D, Qian X, Wärdell E, Custodio J, Reimegård J, Salmén F, Österholm C, Ståhl PL, Sundström E, Åkesson E, Bergmann O, Bienko M, Månsson-Broberg A, Nilsson M, Sylvén C, Lundeberg J*
Cell (2019)

Preparation of plant tissue to enable Spatial Transcriptomics profiling using barcoded microarrays
Giacomello S* and Lundeberg J*
Nature Protocols (2018)

Spatially resolved transcriptome profiling in model plant species
Giacomello S*, Salmén F, Terebieniec B K, Vickovic S, Navarro J F, Alexeyenko A, Reimegård J, McKee L S, Mannapperuma C, Bulone V, Ståhl P L, Sundström J F, Street N R, Lundeberg J*
Nature Plants (2017)

Visualization and analysis of gene expression in tissue sections by spatial transcriptomics
Ståhl PL, Salmén F, Vickovic S, Lundmark A, Fernández Navarro J, Magnusson J, Giacomello S, Asp M, Westholm JO, Huss M, Mollbrink A, Linnarsson S, Codeluppi S, Borg Å, Pontén F, PI Costea, Sahlén P, Mulder J, Bergmann O, Lundeberg J*, Frisén J
Science (2016)

* Corresponding author
† Authors contributed equally