Ståhl Lab

Patrik Ståhl
Asst. Professor, Principal Investigator, KTH
Email: patrik.stahl@scilifelab.se


Team members

Patrik Ståhl, Asst. Professor, Team leader, KTH
Konstantin Carlberg, PhD candidate, KTH
Maja Marklund, PhD candidate, KTH
Lovisa Franzén, Research Engineer, KTH
Nayanika Bhalla, Research Engineer, KTH

Key publications

Multidimensional transcriptomics provides detailed information about immune cell distribution and identity in HER2+ breast tumors
Salmén F, Vickovic S, Larsson L, Stenbeck L, Vallon-Christersson J, Ehinger A, Häkkinen J, Borg Å, Frisén J, Ståhl PL and Lundeberg J
Available at bioRxiv

High-density spatial transcriptomics arrays for in situ tissue profiling
Vickovic S*, Eraslan G, Salmén F, Klughammer J, Stenbeck L, Äijö T, Bonneau R, Bergenstråhle L, Fernandéz Navarro J, Gould J, Ronaghi M, Frisén J, Lundeberg J*, Regev A, Ståhl PL
Nature Methods (2019)

ST Viewer: A tool for analysis and visualization of Spatial Transcriptomics datasets
Fernández Navarro J*, Lundeberg J and Ståhl PL
Bioinformatics (2019)

Barcoded solid phase RNA capture for Spatial Transcriptomics profiling in mammalian tissue sections
Salmén F†, Ståhl PL†*, Mollbrink A, Fernández Navarro J, Vickovic S, Frisén J & Lundeberg J*
Nature Protocols (2018)

Spatial maps of prostate cancer transcriptomes reveal an unexplored landscape of heterogeneity
Berglund E, Maaskola J, Schultz N, Friedrich S, Marklund M, Bergenstråhle J, Tarish F, Tanoglidi A, Vickovic S, Larsson L, Salmeń F, Ogris C, Wallenborg K, Lagergren J, Ståhl PL, Sonnhammer E, Helleday T*, Lundeberg J*
Nature Communications (2018)

ST Spot Detector: a web-based application for automatic spot and tissue detection for Spatial Transcriptomics image data sets
Wong K†, Navarro JF†*, Bergenstråhle L, Ståhl PL, Lundeberg J
Bioinformatics (2018)

Spatial detection of fetal marker genes expressed at low level in adult human heart tissue
Asp M, Salmén F†, Ståhl PL†, Vickovic S†, Felldin U, Löfling M, Navarro JF, Maaskola J, Eriksson MJ, Persson B, Corbascio M, Persson H, Linde C, Lundeberg J*
Scientific Reports (2017)

ST Pipeline: an automated pipeline for spatial mapping of unique transcripts
Navarro J F*, Sjöstrand J, Salmén F, Lundeberg J, Ståhl PL
Bioinformatics (2017)

An automated approach to prepare tissue-derived spatially barcoded RNA-sequencing libraries
Jemt A, Salmén F, Lundmark A, Mollbrink A, Fernández Navarro J, Ståhl PL, Tülay YL, Lundeberg J
Scientific Reports (2016)

Massive and parallel expression profiling using microarrayed single-cell sequencing
Vickovic S, Ståhl PL, Salmén F, Giatrelis S, Westholm JO, Mollbrink A, Fernández Navarro J, Custodio J, Bienko M, Sutton LA, Rosenquist R, Frisén J, Lundeberg J*
Nature Communications (2016)

Visualization and analysis of gene expression in tissue sections by spatial transcriptomics
Ståhl PL†, Salmén F†, Vickovic S, Lundmark A, Fernández Navarro J, Magnusson J, Giacomello S, Asp M, Westholm JO, Huss M, Mollbrink A, Linnarsson S, Codeluppi S, Borg Å, Pontén F, PI Costea, Sahlén P, Mulder J, Bergmann O, Lundeberg J*, Frisén J
Science (2016)

* Corresponding author
† Authors contributed equally