News

MAY 4TH 2020


NEW REVIEW OUT. “Spatially Resolved Transcriptomes—Next Generation Tools for Tissue Exploration” is new review article written by our own Michaela, Joseph, and Joakim! In this publication you can read about the different spatially resolved transcriptomics technologies available as of today, how they compare against each other, and what we may expect from the future.

Read the review here.

APR 29TH 2020


SPATIALCPIE FOR ST ANALYSIS. “SpatialCPie” is a new R/Bioconductor package, developed by Joseph and Ludvig Bergenstråhle, which can be used for visualization of clusters at multiple resolutions and proportions for your spatial transcriptomics data. Read more about the tool on GitHub, Bioconductor, or the BMC Genomics publication “SpatialCPie: an R/Bioconductor package for spatial transcriptomics cluster evaluation”.

The full open access article can be read here.

APR 15TH 2020


PUBLICATION ALERT! 🤖Today you can read about “Automation of Spatial Transcriptomics library preparation to enable rapid and robust insights into spatial organization of tissues” in BMC Genomics. If you are interested in automating you spatial transcriptomics library prep pipeline then Emelie, Sami, and the other co-authors have it all figured out for you!

The full publication can be read here.

FEB 23-26TH 2020


MEET US AT AGBT! Our group will be present at the Advances in Genome Biology and Technology (AGBT) 2020 conference on Marco Island, Florida. Check out the posters presented by Alma (#901), Lovisa (#7001), Linnea (#6008), Kim (#610), and Joseph (#110)! #AGBT20

Visit the AGBT website for more information about the conference.

DEC 12TH 2019


NEW PUBLICATION OUT IN CELL! ✨ After much hard work, Michaela Asp’s and Stefania Giacomello’s article “A spatiotemporal organ-wide gene expression and cell atlas of the developing human heart” is now in print! Together with co-authors Ludvig Larsson and others, they have mapped the cellular organisation of the developing human heart. We hope this will be a great resource for many researchers who wish to explore the heart development. ❤️

The full article can be read here.

SPATIAL TRANSCRIPTOMICS IN RHEUMATOID ARTHRITIS. Today is a great day – our group did not only get one article published, but two! Konstantin Carlberg, PhD student, has worked together with Vivianne Malmström and her group at Karolinska Institutet to study the spatial signatures of inflammation in arthritic joints. The article entitled “Exploring inflammatory signatures in arthritic joint biopsies with Spatial Transcriptomics” was published in Scientific Reports.

SEP 27TH 2019


MOLECULAR ATLAS OF THE ADULT MOUSE BRAIN. A pre-print of Jose Fernandez Navarro’s fantastic work together with members from Dinos Meletis‘ group is now available on bioRxiv.

SEP 24-26TH 2019


SINGLE CELL GENOMICS CONFERENCE IN STOCKHOLM. Several people in our research group attended the SCG conference at Djurönäset in Stockholm. Our own Emelie Berglund was one of the speakers!

SEP 9TH 2019


NEW PUBLICATION OUT IN NATURE METHODS. Our article “High-definition spatial transcriptomics for in situ tissue profiling” is out in Nature Methods! Read about the new 2-μm resolution spatial arrays by following the link.

No older news available!
Our news updates started in September 2019.

Please go to the Publication page for a list of all our published articles,
or visit the lab pages under the “Research” tab for more information about our people.