Computational tools

We have developed a set of open source tools for analysis, storage, and visualization of Spatial Transcriptomics datasets.

All our tools can be found at GitHub:
https://github.com/SpatialTranscriptomicsResearch/

• Spatial Transcriptomics Pipeline

• Spatial Transcriptomics Spot Detector

• Spatial Transcriptomics Viewer (and related packages)

• Three-Dimensional Viewer

• Other programs and scripts